The National Collegiate Athletic Association (Philippines) swimming tournament is held every August during the year-long NCAA season.
The championship is determined by the total number of points accumulated by a team, by virtue by the placements in the final rounds (similar to the method used in the General Championship.
Champions
Demonstration sport
Denotes school won the triple crown
Denotes school won 2 of 3 divisions in the same year
| Academic Year | Juniors' | Men's | Women's |
|---|---|---|---|
| 1925-26 | No tournament |  University of the Philippines (1) | No tournament |
| 1926-27 | University of the Philippines (2) | ||
| 1927-29 | Not Held | ||
| 1929-30 |  University of Santo Tomas (1) | ||
| 1930-31 | University of the Philippines (3) | ||
| 1931-32 | Not Held | ||
| 1932-33 |  San Beda College (1) | ||
| 1933-34 | San Beda College (2) | ||
| 1934-35 |  De La Salle College (1) | San Beda College (3) | |
| 1935-36 | De La Salle College (2) | De La Salle College (1) | |
| 1936-37 |  Mapúa Institute of Technology (1) | San Beda College (4) | |
| 1937-38 | Not Held | ||
| 1938-39 | De La Salle College (3) | San Beda College (5) | |
| 1939-40 | Mapúa Institute of Technology (2) | Mapúa Institute of Technology (1) | |
| 1940-41 | Mapúa Institute of Technology (3) |  Colegio de San Juan de Letran (1) | |
| 1941-47 | Not Held due to World War II | ||
| 1947-48 | San Beda College (1) | Mapúa Institute of Technology (2) | |
| 1948-49 | San Beda College (2) | Mapúa Institute of Technology (3) | |
| 1949-50 | Mapúa Institute of Technology (4) | Mapúa Institute of Technology (4) | |
| 1950-51 | Not Held | ||
| 1951-52 | Mapúa Institute of Technology (5) | Mapúa Institute of Technology (5) | |
| 1952-53 | Mapúa Institute of Technology (6) | Mapúa Institute of Technology (6) | |
| 1953-54 | Mapúa Institute of Technology (7) | Mapúa Institute of Technology (7) | |
| 1954-55 | Mapúa Institute of Technology (8) | Mapúa Institute of Technology (8) | |
| 1955-56 | Mapúa Institute of Technology (9) | Mapúa Institute of Technology (9) | |
| 1956-57 | Mapúa Institute of Technology (10) | Mapúa Institute of Technology (10) | |
| 1957-58 | Mapúa Institute of Technology (11) | Mapúa Institute of Technology (11) | |
| 1958-59 | Mapúa Institute of Technology (12) | Mapúa Institute of Technology (12) | |
| 1959-60 | Mapúa Institute of Technology (13) | Mapúa Institute of Technology (13) | |
| 1960-61 | Mapúa Institute of Technology (14) | Mapúa Institute of Technology (14) | |
| 1961-62 | Suspended | ||
| 1962-65 | Not Held | ||
| 1965-66 | Mapúa Institute of Technology (15) | Mapúa Institute of Technology (15) | |
| 1966-67 | Mapúa Institute of Technology (16) | Mapúa Institute of Technology (16) | |
| 1967-68 | Mapúa Institute of Technology (17) | Mapúa Institute of Technology (17) | |
| 1968-69 | Mapúa Institute of Technology (18) | Mapúa Institute of Technology (18) | |
| 1969-70 | Mapúa Institute of Technology (19) | Mapúa Institute of Technology (19) | |
| 1970-71 | Mapúa Institute of Technology (20) | Mapúa Institute of Technology (20) | |
| 1971-72 | Mapúa Institute of Technology (21) | Mapúa Institute of Technology (21) | |
| 1972-73 | San Beda College (3) | Mapúa Institute of Technology (22) | |
| 1973-74 | Not Held | ||
| 1974-75 | La Salle Green Hills (1) | Mapúa Institute of Technology (23) | |
| 1975-76 | Not Held | ||
| 1976-77 | La Salle Green Hills (2) | Mapúa Institute of Technology (24) | |
| 1977-78 | La Salle Green Hills (3) | Mapúa Institute of Technology (25) | |
| 1978-79 | La Salle Green Hills (4) | Mapúa Institute of Technology (26) | |
| 1979-80 | La Salle Green Hills (5) | Mapúa Institute of Technology (27) | |
| 1980-81 | La Salle Green Hills (6) | Mapúa Institute of Technology (28) | |
| 1981-82 | San Beda College (4) | Mapúa Institute of Technology (29) | |
| 1982-83 | San Beda College (5) | Mapúa Institute of Technology (30) | |
| 1983-84 | Colegio de San Juan de Letran (1) | Mapúa Institute of Technology (31) | |
| 1984-85 |  San Sebastian College–Recoletos (1) | Mapúa Institute of Technology (32) | |
| 1985-86 | Colegio de San Juan de Letran (2) | Mapúa Institute of Technology (33) | |
| 1986-87 | San Beda College (6) | Colegio de San Juan de Letran (2) | |
| 1987-88 | San Beda College (7) | Mapúa Institute of Technology (34) | |
| 1988-89 | San Beda College (8) | Mapúa Institute of Technology (35) | |
| 1989-90 | San Beda College (9) | Mapúa Institute of Technology (36) | |
| 1990-91 | San Beda College (10) | Mapúa Institute of Technology (37) | |
| 1991-92 | Mapúa Institute of Technology (22) | Mapúa Institute of Technology (38) | |
| 1992-93 | San Beda College (11) | Not Held | |
| 1993-94 | San Beda College (12) | Mapúa Institute of Technology (39) | |
| 1994-95 | San Beda College (13) | San Sebastian College–Recoletos (1) | |
| 1995-96 |  Perpetual Help College of Rizal (1) | Perpetual Help College of Rizal (1) | |
| 1996-97 | San Beda College (14) | Mapúa Institute of Technology (40) | |
| 1997-98 | San Beda College (15) | University of Perpetual Help Rizal (2) | |
| 1998-99 | San Beda College (16) | University of Perpetual Help Rizal (3) | |
| 1999-2000 | San Beda College (17) |  Philippine Christian University (1) | |
| 2000-01 | San Beda College (18) | Philippine Christian University (2) | |
| 2001-02 | San Beda College (19) | Philippine Christian University (3) | |
| 2002-03 | San Beda College (20) | San Beda College (6) | |
| 2003-04 | San Beda College (21) | San Beda College (7) | |
| 2004-05 |  La Salle Green Hills (7) | San Beda College (8) | |
| 2005-06 | La Salle Green Hills (8) | San Beda College (9) | |
| 2006-07 | La Salle Green Hills (9) | San Beda College (10) | |
| 2007-08 | La Salle Green Hills (10) | San Beda College (11) | |
| 2008-09 | La Salle Green Hills (11) | San Beda College (12) | |
| 2009-10 | La Salle Green Hills (12) | San Beda College (13) | De La Salle–College of Saint Benilde (1) |
| 2010-11 | La Salle Green Hills (13) | San Beda College (14) | De La Salle–College of Saint Benilde (2) |
| 2011-12 | La Salle Green Hills (14) | San Beda College (15) | San Beda College (1) |
| 2012-13 | La Salle Green Hills (15) | San Beda College (16) | San Beda College (2) |
| 2013-14 | La Salle Green Hills (16) | San Beda College (17) | San Beda College (3) |
| 2014-15 | La Salle Green Hills (17) | San Beda College (18) | San Beda College (4) |
| 2015-16 | La Salle Green Hills (18) | San Beda College (19) | San Beda College (5) |
| 2016-17 | San Beda College–Rizal (22) | San Beda College (20) | San Beda College (6) |
| 2017-18 | San Beda College–Rizal (23) | San Beda College (21) | San Beda College (7) |
| 2018-19 | San Beda University (22) | San Beda University (8) | |
| 2019-20 | La Salle Green Hills (19) | San Beda University (23) | San Beda University (9) |
Number of championships by school
The school left the league
| School | Juniors' | Men's | Women's | Total |
|---|---|---|---|---|
| Mapúa University | 22 | 40 | 0 | 62 |
| San Beda University | 23 | 23 | 9 | 55 |
| La Salle Green Hills | 19 | 0 | 0 | 19 |
| Colegio de San Juan de Letran | 2 | 2 | 0 | 4 |
| De La Salle College | 3 | 1 | 0 | 4 |
| University of Perpetual Help System DALTA | 1 | 3 | 0 | 4 |
| Philippine Christian University | 0 | 3 | 0 | 3 |
| University of the Philippines | 0 | 3 | 0 | 3 |
| De La Salle–College of Saint Benilde | 0 | 0 | 2 | 2 |
| San Sebastian College–Recoletos | 1 | 1 | 0 | 2 |
| University of Santo Tomas | 0 | 1 | 0 | 1 |
Note
- LSGH has won six (6) championships under DLSU and thirteen (13) championships under CSB.